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[ref_mOTU_v2_0265]", "Bacteroides stercoris [ref_mOTU_v2_0275]", "Prevotella nigrescens [ref_mOTU_v2_0276]", "Streptococcus sanguinis [ref_mOTU_v2_0279]", "Ruminococcus gnavus [ref_mOTU_v2_0280]", "Ruminococcus lactaris [ref_mOTU_v2_0281]", "Bacteroides fragilis [ref_mOTU_v2_0286]", "Bacteroides fragilis [ref_mOTU_v2_0287]", "Streptococcus mutans [ref_mOTU_v2_0289]", "Bacteroides nordii [ref_mOTU_v2_0302]", "Coprococcus sp. [ref_mOTU_v2_0303]", "Streptococcus anginosus [ref_mOTU_v2_0351]", "Streptococcus oralis [ref_mOTU_v2_0356]", "Haemophilus parainfluenzae [ref_mOTU_v2_0358]", "Lactococcus lactis [ref_mOTU_v2_0371]", "Enterococcus faecium [ref_mOTU_v2_0372]", "Acidaminococcus intestini [ref_mOTU_v2_0391]", "Streptococcus sp. [ref_mOTU_v2_0416]", "Anaerococcus obesiensis/vaginalis [ref_mOTU_v2_0429]", "Bacteroides barnesiae [ref_mOTU_v2_0452]", "Bacteroides massiliensis [ref_mOTU_v2_0455]", "Bacteroides salyersiae [ref_mOTU_v2_0458]", "Blautia wexlerae [ref_mOTU_v2_0466]", "Clostridium saccharogumia [ref_mOTU_v2_0473]", "Megamonas funiformis/rupellensis [ref_mOTU_v2_0502]", "Prevotella intermedia [ref_mOTU_v2_0515]", "Prevotella oris [ref_mOTU_v2_0520]", "Solobacterium moorei [ref_mOTU_v2_0531]", "Veillonella atypica [ref_mOTU_v2_0561]", "Lactobacillus mucosae [ref_mOTU_v2_0568]", "Enterococcus durans [ref_mOTU_v2_0598]", "Bifidobacterium dentium [ref_mOTU_v2_0631]", "Bifidobacterium pseudocatenulatum [ref_mOTU_v2_0632]", "Bifidobacterium catenulatum/kashiwanohense [ref_mOTU_v2_0633]", "Eggerthella lenta [ref_mOTU_v2_0642]", "Clostridium innocuum [ref_mOTU_v2_0643]", "Enterococcus faecium/hirae [ref_mOTU_v2_0654]", "Streptococcus salivarius [ref_mOTU_v2_0656]", "Streptococcus anginosus [ref_mOTU_v2_0687]", "Bacteroides cellulosilyticus/timonensis [ref_mOTU_v2_0692]", "Lactobacillus gasseri [ref_mOTU_v2_0725]", "Atopobium parvulum [ref_mOTU_v2_0741]", "Fusobacterium nucleatum s. vincentii [ref_mOTU_v2_0754]", "Sutterella wadsworthensis [ref_mOTU_v2_0767]", "Alistipes onderdonkii [ref_mOTU_v2_0775]", "Fusobacterium nucleatum s. animalis [ref_mOTU_v2_0776]", "Fusobacterium nucleatum s. nucleatum [ref_mOTU_v2_0777]", "Bifidobacterium bifidum [ref_mOTU_v2_0786]", "Streptococcus equinus [ref_mOTU_v2_0793]", "Oscillibacter sp. KLE 1728 [ref_mOTU_v2_0858]", "Blautia sp. KLE 1732 [ref_mOTU_v2_0859]", "Clostridium sp. KLE 1755 [ref_mOTU_v2_0860]", "Hungatella hathewayi [ref_mOTU_v2_0882]", "Clostridium scindens [ref_mOTU_v2_0883]", "Anaerotruncus colihominis [ref_mOTU_v2_0884]", "Erysipelotrichaceae sp. [ref_mOTU_v2_0885]", "Clostridium boltae/clostridioforme [ref_mOTU_v2_0886]", "Lachnospiraceae bacterium 3_1_57FAA_CT1 [ref_mOTU_v2_0887]", "Bacteroides thetaiotaomicron [ref_mOTU_v2_0897]", "Bacteroides dorei/vulgatus [ref_mOTU_v2_0898]", "Bacteroides rodentium/uniformis [ref_mOTU_v2_0899]", "Parabacteroides goldsteinii [ref_mOTU_v2_0901]", "Phascolarctobacterium succinatutens [ref_mOTU_v2_0947]", "Megasphaera sp. [ref_mOTU_v2_0965]", "Dorea formicigenerans [ref_mOTU_v2_0973]", "Clostridium clostridioforme [ref_mOTU_v2_0979]", "Veillonella parvula [ref_mOTU_v2_1042]", "Lactobacillus fermentum [ref_mOTU_v2_1050]", "Bacteroides xylanisolvens [ref_mOTU_v2_1072]", "Bacteroides fragilis/ovatus [ref_mOTU_v2_1073]", "Bacteroidales sp. [ref_mOTU_v2_1074]", "Lactobacillus reuteri [ref_mOTU_v2_1076]", "Porphyromonadaceae sp. [ref_mOTU_v2_1091]", "Clostridium perfringens [ref_mOTU_v2_1117]", "Mogibacterium timidum [ref_mOTU_v2_1136]", "Parvimonas micra [ref_mOTU_v2_1145]", "Bilophila wadsworthia [ref_mOTU_v2_1149]", "Bifidobacterium adolescentis [ref_mOTU_v2_1156]", "Bifidobacterium ruminantium [ref_mOTU_v2_1159]", "Bifidobacterium sp. [ref_mOTU_v2_1180]", "Hafnia alvei [ref_mOTU_v2_1202]", "Bifidobacterium angulatum [ref_mOTU_v2_1285]", "Akkermansia muciniphila [ref_mOTU_v2_1301]", "Anaerostipes hadrus [ref_mOTU_v2_1309]", "Ruminococcus torques [ref_mOTU_v2_1376]", "Flavonifractor plautii [ref_mOTU_v2_1377]", "Parabacteroides merdae [ref_mOTU_v2_1378]", "Faecalibacterium prausnitzii [ref_mOTU_v2_1379]", "Clostridium saccharolyticum [ref_mOTU_v2_1380]", "Anaerostipes caccae [ref_mOTU_v2_1381]", "Bacteroides caccae [ref_mOTU_v2_1382]", "Collinsella aerofaciens [ref_mOTU_v2_1383]", "Methanobrevibacter smithii [ref_mOTU_v2_1384]", "Methanobrevibacter smithii [ref_mOTU_v2_1385]", "Eubacterium siraeum [ref_mOTU_v2_1387]", "Desulfovibrio sp. [ref_mOTU_v2_1394]", "Eubacterium sp. [ref_mOTU_v2_1395]", "Fusobacterium ulcerans [ref_mOTU_v2_1396]", "Streptococcus sp. 2_1_36FAA [ref_mOTU_v2_1399]", "Coprobacillus sp. [ref_mOTU_v2_1401]", "Fusobacterium sp. oral taxon 370 [ref_mOTU_v2_1403]", "Fusobacterium gonidiaformans [ref_mOTU_v2_1404]", "Parasutterella excrementihominis [ref_mOTU_v2_1405]", "Bacteroides finegoldii [ref_mOTU_v2_1409]", "Bacteroides eggerthii [ref_mOTU_v2_1410]", "Eubacterium rectale [ref_mOTU_v2_1416]", "Roseburia intestinalis [ref_mOTU_v2_1427]", "Blautia hansenii [ref_mOTU_v2_1428]", "Faecalitalea cylindroides [ref_mOTU_v2_1470]", "Clostridium symbiosum [ref_mOTU_v2_1475]", "Alistipes finegoldii [ref_mOTU_v2_1481]", "Turicibacter sanguinis [ref_mOTU_v2_1493]", "Porphyromonas asaccharolytica [ref_mOTU_v2_1517]", "Streptococcus australis [ref_mOTU_v2_1524]", "Prevotella stercorea [ref_mOTU_v2_1551]", "Alistipes timonensis [ref_mOTU_v2_1593]", "Alistipes senegalensis [ref_mOTU_v2_1594]", "Senegalimassilia anaerobia [ref_mOTU_v2_1606]", "Bacteroides faecis [ref_mOTU_v2_1706]", "Enorma massiliensis [ref_mOTU_v2_1824]", "Alistipes obesi [ref_mOTU_v2_1825]", "Blautia producta [ref_mOTU_v2_1889]", "Parabacteroides gordonii [ref_mOTU_v2_2090]", "Porphyromonas somerae [ref_mOTU_v2_2101]", "Porphyromonas uenonis [ref_mOTU_v2_2102]", "Faecalicoccus pleomorphus [ref_mOTU_v2_2178]", "Ruminococcus bicirculans [ref_mOTU_v2_2358]", "Butyricicoccus pullicaecorum [ref_mOTU_v2_2510]", "cand. Alistipes marseilloanorexicus [ref_mOTU_v2_2553]", "Holdemania massiliensis [ref_mOTU_v2_2557]", "Megasphaera massiliensis [ref_mOTU_v2_2684]", "Clostridiales bacterium VE202-14 [ref_mOTU_v2_2689]", "Bacteroides stercorirosoris [ref_mOTU_v2_2726]", "Eubacterium ramulus [ref_mOTU_v2_2795]", "Phascolarctobacterium sp. [ref_mOTU_v2_2805]", "Phascolarctobacterium sp. [ref_mOTU_v2_2806]", "Clostridium paraputrificum [ref_mOTU_v2_2890]", "Dorea longicatena [ref_mOTU_v2_2893]", "Intestinimonas butyriciproducens [ref_mOTU_v2_2968]", "Adlercreutzia equolifaciens [ref_mOTU_v2_3198]", "Mitsuokella jalaludinii [ref_mOTU_v2_3339]", "Clostridium sp. JCC [ref_mOTU_v2_3353]", "Alistipes inops [ref_mOTU_v2_3597]", "bacterium OL-1 [ref_mOTU_v2_3607]", "bacterium LF-3 [ref_mOTU_v2_3608]", "Oscillibacter sp. ER4 [ref_mOTU_v2_3624]", "Ruminococcus champanellensis [ref_mOTU_v2_3773]", "butyrate-producing bacterium SS3/4 [ref_mOTU_v2_3825]", "Blautia producta [ref_mOTU_v2_4020]", "Pyramidobacter piscolens [ref_mOTU_v2_4064]", "Blautia obeum [ref_mOTU_v2_4202]", "Dorea longicatena [ref_mOTU_v2_4203]", "Eubacterium ventriosum [ref_mOTU_v2_4204]", "Desulfovibrio piger [ref_mOTU_v2_4205]", "Eubacterium hallii [ref_mOTU_v2_4207]", "Ruminococcus callidus [ref_mOTU_v2_4209]", "Coprococcus eutactus [ref_mOTU_v2_4210]", "Faecalibacterium prausnitzii [ref_mOTU_v2_4211]", "Clostridium sp. L2-50 [ref_mOTU_v2_4212]", "Clostridium leptum [ref_mOTU_v2_4234]", "Clostridium spiroforme [ref_mOTU_v2_4235]", "Alistipes putredinis [ref_mOTU_v2_4266]", "Intestinibacter bartlettii [ref_mOTU_v2_4268]", "Synergistes sp. 3_1_syn1 [ref_mOTU_v2_4289]", "Fusobacterium mortiferum [ref_mOTU_v2_4310]", "Fusobacterium varium [ref_mOTU_v2_4311]", "Bacteroides coprocola [ref_mOTU_v2_4312]", "Coprococcus comes [ref_mOTU_v2_4313]", "Bacteroides intestinalis [ref_mOTU_v2_4321]", "Blautia hydrogenotrophica [ref_mOTU_v2_4324]", "Bacteroides pectinophilus [ref_mOTU_v2_4341]", "Bacteroides plebeius [ref_mOTU_v2_4343]", "Tyzzerella nexilis [ref_mOTU_v2_4366]", "Mitsuokella multacida [ref_mOTU_v2_4368]", "Butyrivibrio crossotus [ref_mOTU_v2_4383]", "Eubacterium eligens [ref_mOTU_v2_4389]", "Clostridium asparagiforme [ref_mOTU_v2_4394]", "Holdemanella biformis [ref_mOTU_v2_4395]", "Collinsella intestinalis [ref_mOTU_v2_4400]", "Prevotella copri [ref_mOTU_v2_4448]", "Holdemania filiformis [ref_mOTU_v2_4459]", "Veillonella dispar [ref_mOTU_v2_4469]", "Bacteroides coprophilus [ref_mOTU_v2_4472]", "Ruminococcaceae bacterium D16 [ref_mOTU_v2_4480]", "Gemella morbillorum [ref_mOTU_v2_4513]", "Roseburia hominis [ref_mOTU_v2_4572]", "Acidaminococcus fermentans [ref_mOTU_v2_4591]", "Dialister invisus [ref_mOTU_v2_4598]", "Peptostreptococcus stomatis [ref_mOTU_v2_4614]", "Porphyromonas uenonis [ref_mOTU_v2_4616]", "Roseburia inulinivorans [ref_mOTU_v2_4632]", "Alloprevotella tannerae [ref_mOTU_v2_4636]", "Granulicatella adiacens [ref_mOTU_v2_4659]", "Ruminococcus torques [ref_mOTU_v2_4718]", "Blautia obeum [ref_mOTU_v2_4719]", "Ruminococcus bromii [ref_mOTU_v2_4720]", "Lachnospiraceae bacterium 1_4_56FAA [ref_mOTU_v2_4723]", "Erysipelotrichaceae sp. [ref_mOTU_v2_4724]", "Subdoligranulum sp. 4_3_54A2FAA [ref_mOTU_v2_4738]", "Megasphaera micronuciformis [ref_mOTU_v2_4840]", "Odoribacter splanchnicus [ref_mOTU_v2_4846]", "Alistipes shahii [ref_mOTU_v2_4873]", "Coprococcus catus [ref_mOTU_v2_4874]", "Faecalibacterium prausnitzii [ref_mOTU_v2_4875]", "Alistipes indistinctus [ref_mOTU_v2_4879]", "Barnesiella intestinihominis [ref_mOTU_v2_4880]", "Clostridium citroniae [ref_mOTU_v2_4882]", "Collinsella tanakaei [ref_mOTU_v2_4884]", "Dialister succinatiphilus [ref_mOTU_v2_4885]", "Slackia piriformis [ref_mOTU_v2_4888]", "Sutterella wadsworthensis [ref_mOTU_v2_4889]", "Faecalibacterium prausnitzii [ref_mOTU_v2_4910]", "Paraprevotella clara [ref_mOTU_v2_4942]", "Paraprevotella xylaniphila [ref_mOTU_v2_4943]", "Succinatimonas hippei [ref_mOTU_v2_4944]", "Bacteroides clarus [ref_mOTU_v2_4945]", "Bacteroides fluxus [ref_mOTU_v2_4946]", "Parvimonas sp. [ref_mOTU_v2_4961]", "Veillonella sp. [ref_mOTU_v2_5068]", "Parvimonas sp. [ref_mOTU_v2_5245]", "Parabacteroides johnsonii [ref_mOTU_v2_5296]", "unknown Clostridia [meta_mOTU_v2_5309]", "unknown Bacteroidales [meta_mOTU_v2_5329]", "unknown Ruminococcaceae [meta_mOTU_v2_5330]", "unknown Clostridium [meta_mOTU_v2_5331]", "unknown Clostridium [meta_mOTU_v2_5336]", "unknown Dialister [meta_mOTU_v2_5337]", "unknown Clostridiales [meta_mOTU_v2_5339]", "unknown Clostridiales [meta_mOTU_v2_5341]", "unknown Clostridium [meta_mOTU_v2_5343]", "unknown Clostridia [meta_mOTU_v2_5344]", "unknown Clostridiales [meta_mOTU_v2_5347]", "Oscillibacter sp. 57_20 [meta_mOTU_v2_5351]", "unknown Clostridium [meta_mOTU_v2_5353]", "unknown Roseburia [meta_mOTU_v2_5354]", "unknown Anaeromassilibacillus [meta_mOTU_v2_5357]", "unknown Clostridiales [meta_mOTU_v2_5362]", "Clostridium sp. CAG:127 [meta_mOTU_v2_5364]", "unknown Clostridium [meta_mOTU_v2_5366]", "unknown Eggerthellaceae [meta_mOTU_v2_5373]", "unknown Bacteroidales [meta_mOTU_v2_5375]", "unknown Coprococcus [meta_mOTU_v2_5379]", "unknown Clostridiaceae [meta_mOTU_v2_5382]", "Azospirillum sp. CAG:239 [meta_mOTU_v2_5386]", "Clostridium sp. CAG:440 [meta_mOTU_v2_5389]", "unknown Ruminococcus [meta_mOTU_v2_5392]", "unknown Sutterellaceae [meta_mOTU_v2_5393]", "unknown Clostridiales [meta_mOTU_v2_5396]", "unknown Clostridiales [meta_mOTU_v2_5397]", "Prevotella sp. CAG:279 [meta_mOTU_v2_5405]", "unknown Clostridiales [meta_mOTU_v2_5408]", "unknown Clostridiales [meta_mOTU_v2_5411]", "unknown Clostridiales [meta_mOTU_v2_5412]", "unknown Clostridium [meta_mOTU_v2_5413]", "unknown Clostridiales [meta_mOTU_v2_5415]", "unknown Alistipes [meta_mOTU_v2_5423]", "unknown Porphyromonas [meta_mOTU_v2_5431]", "unknown Dehalococcoidales [meta_mOTU_v2_5435]", "unknown Butyricicoccus [meta_mOTU_v2_5437]", "unknown Clostridiales [meta_mOTU_v2_5442]", "Ruminococcus sp. CAG:177 [meta_mOTU_v2_5453]", "unknown Eubacterium [meta_mOTU_v2_5463]", "Clostridium sp. CAG:793 [meta_mOTU_v2_5464]", "unknown Clostridiales [meta_mOTU_v2_5466]", "uncultured Eubacterium sp. [meta_mOTU_v2_5477]", "unknown Dehalococcoidales [meta_mOTU_v2_5481]", "Clostridiales bacterium 41_21_two_genomes [meta_mOTU_v2_5482]", "Clostridiales bacterium S5-A14a [meta_mOTU_v2_5486]", "Clostridium sp. CAG:571 [meta_mOTU_v2_5498]", "Clostridium sp. CAG:594 [meta_mOTU_v2_5501]", "unknown Prevotella [meta_mOTU_v2_5502]", "unknown Clostridium [meta_mOTU_v2_5505]", "unknown Clostridiales [meta_mOTU_v2_5511]", "unknown Clostridiales [meta_mOTU_v2_5513]", "unknown Clostridiales [meta_mOTU_v2_5514]", "unknown Clostridiales [meta_mOTU_v2_5517]", "unknown Bacteroidales [meta_mOTU_v2_5520]", "unknown Firmicutes [meta_mOTU_v2_5525]", "unknown Synergistaceae [meta_mOTU_v2_5538]", "unknown Clostridiales [meta_mOTU_v2_5540]", "Libanicoccus massiliensis [meta_mOTU_v2_5543]", "unknown Phascolarctobacterium [meta_mOTU_v2_5554]", "unknown Prevotella [meta_mOTU_v2_5555]", "unknown Clostridium [meta_mOTU_v2_5561]", "unknown Prevotellaceae [meta_mOTU_v2_5568]", "unknown Clostridiales [meta_mOTU_v2_5569]", "unknown Clostridiales [meta_mOTU_v2_5571]", "unknown Clostridiales [meta_mOTU_v2_5583]", "unknown Bacteroidales [meta_mOTU_v2_5584]", "unknown Clostridium [meta_mOTU_v2_5585]", "unknown Clostridiales [meta_mOTU_v2_5591]", "unknown Clostridiales [meta_mOTU_v2_5603]", "unknown Bacteroides [meta_mOTU_v2_5618]", "unknown Ruminococcus [meta_mOTU_v2_5630]", "Mailhella massiliensis [meta_mOTU_v2_5632]", "unknown Clostridiales [meta_mOTU_v2_5641]", "unknown Streptococcus [meta_mOTU_v2_5642]", "unknown Bacteroidales [meta_mOTU_v2_5647]", "unknown Bacteria [meta_mOTU_v2_5651]", "Azospirillum sp. 51_20 [meta_mOTU_v2_5652]", "unknown Clostridiales [meta_mOTU_v2_5653]", "unknown Bacteroidales [meta_mOTU_v2_5655]", "unknown Anaeromassilibacillus [meta_mOTU_v2_5656]", "unknown Firmicutes [meta_mOTU_v2_5660]", "unknown Clostridiales [meta_mOTU_v2_5661]", "unknown Prevotella [meta_mOTU_v2_5668]", "unknown Clostridiales [meta_mOTU_v2_5669]", "unknown Odoribacter [meta_mOTU_v2_5670]", "unknown Sutterella [meta_mOTU_v2_5677]", "Clostridium sp. CAG:273 [meta_mOTU_v2_5681]", "Mycoplasma sp. CAG:611 [meta_mOTU_v2_5692]", "Clostridium sp. CAG:306 [meta_mOTU_v2_5698]", "Butyrivibrio sp. CAG:318 [meta_mOTU_v2_5702]", "unknown Veillonellaceae [meta_mOTU_v2_5707]", "Bacteroides sp. CAG:462 [meta_mOTU_v2_5709]", "unknown Clostridiales [meta_mOTU_v2_5710]", "Prevotella sp. CAG:891 [meta_mOTU_v2_5711]", "unknown Clostridiales [meta_mOTU_v2_5712]", "Clostridium sp. CAG:590 [meta_mOTU_v2_5713]", "Clostridium sp. 27_14 [meta_mOTU_v2_5718]", "unknown Firmicutes [meta_mOTU_v2_5720]", "Clostridium sp. CAG:568 [meta_mOTU_v2_5729]", "Butyricicoccus sp. BB10 [meta_mOTU_v2_5734]", "unknown Clostridiales [meta_mOTU_v2_5735]", "unknown Firmicutes [meta_mOTU_v2_5740]", "unknown Clostridiales [meta_mOTU_v2_5741]", "unknown Peptostreptococcaceae [meta_mOTU_v2_5742]", "unknown Clostridiales [meta_mOTU_v2_5745]", "unknown Clostridium [meta_mOTU_v2_5748]", "unknown Clostridium [meta_mOTU_v2_5751]", "unknown Clostridiales [meta_mOTU_v2_5754]", "Prevotella sp. CAG:485 [meta_mOTU_v2_5757]", "unknown Bacteroidales [meta_mOTU_v2_5773]", "Clostridium sp. CAG:288 [meta_mOTU_v2_5776]", "unknown Faecalibacterium [meta_mOTU_v2_5779]", "unknown Prevotella [meta_mOTU_v2_5780]", "unknown Clostridiales [meta_mOTU_v2_5783]", "unknown Clostridiales [meta_mOTU_v2_5791]", "unknown Butyricicoccus [meta_mOTU_v2_5800]", "unknown Clostridiales [meta_mOTU_v2_5805]", "unknown Clostridiales [meta_mOTU_v2_5806]", "unknown Veillonella [meta_mOTU_v2_5811]", "unknown Faecalibacterium [meta_mOTU_v2_5815]", "unknown Clostridiales [meta_mOTU_v2_5820]", "unknown Clostridiales [meta_mOTU_v2_5826]", "unknown Firmicutes [meta_mOTU_v2_5841]", "unknown Clostridiales [meta_mOTU_v2_5843]", "unknown Oscillibacter [meta_mOTU_v2_5845]", "unknown Clostridiales [meta_mOTU_v2_5849]", "unknown Bacteroidales [meta_mOTU_v2_5852]", "unknown Sutterella [meta_mOTU_v2_5857]", "unknown Dialister [meta_mOTU_v2_5867]", "Oscillibacter sp. CAG:155 [meta_mOTU_v2_5868]", "Clostridium sp. CAG:524 [meta_mOTU_v2_5874]", "unknown Clostridiales [meta_mOTU_v2_5880]", "unknown Roseburia [meta_mOTU_v2_5883]", "unknown Clostridiales [meta_mOTU_v2_5890]", "unknown Clostridiales [meta_mOTU_v2_5894]", "Prevotella sp. CAG:1092 [meta_mOTU_v2_5903]", "unknown Clostridiales [meta_mOTU_v2_5904]", "unknown Clostridiales [meta_mOTU_v2_5905]", "uncultured Clostridium sp. [meta_mOTU_v2_5907]", "Clostridium sp. CAG:451 [meta_mOTU_v2_5908]", "unknown Firmicutes [meta_mOTU_v2_5910]", "Clostridium sp. CAG:780 [meta_mOTU_v2_5914]", "unknown Clostridium [meta_mOTU_v2_5915]", "unknown Clostridiales [meta_mOTU_v2_5922]", "unknown Clostridium [meta_mOTU_v2_5927]", "unknown Sutterella [meta_mOTU_v2_5929]", "unknown Bacilli [meta_mOTU_v2_5934]", "unknown Clostridium [meta_mOTU_v2_5940]", "unknown Oscillibacter [meta_mOTU_v2_5944]", "unknown Tyzzerella [meta_mOTU_v2_5947]", "unknown Bacteroidales [meta_mOTU_v2_5951]", "unknown Clostridiales [meta_mOTU_v2_5954]", "unknown Clostridiales [meta_mOTU_v2_5959]", "unknown Clostridiales [meta_mOTU_v2_5961]", "Ruminococcus sp. CAG:254 [meta_mOTU_v2_5967]", "Eggerthella sp. CAG:298 [meta_mOTU_v2_5975]", "unknown Clostridiales [meta_mOTU_v2_5978]", "unknown Sutterella [meta_mOTU_v2_5982]", "unknown Clostridium [meta_mOTU_v2_5983]", "unknown Clostridiales [meta_mOTU_v2_5991]", "unknown Desulfovibrio [meta_mOTU_v2_5993]", "unknown Clostridiales [meta_mOTU_v2_6000]", "Clostridium sp. CAG:465 [meta_mOTU_v2_6001]", "unknown Clostridiales [meta_mOTU_v2_6009]", "unknown Clostridiales [meta_mOTU_v2_6011]", "unknown Clostridiales [meta_mOTU_v2_6013]", "unknown Clostridiales [meta_mOTU_v2_6022]", "unknown Clostridiales [meta_mOTU_v2_6028]", "unknown Prevotella [meta_mOTU_v2_6029]", "unknown Clostridiales [meta_mOTU_v2_6036]", "unknown Clostridium [meta_mOTU_v2_6039]", "unknown Clostridiales [meta_mOTU_v2_6044]", "unknown Clostridiales [meta_mOTU_v2_6049]", "Anaeromassilibacillus sp. An200 [meta_mOTU_v2_6051]", "unknown Eggerthellales [meta_mOTU_v2_6052]", "unknown Clostridiales [meta_mOTU_v2_6054]", "unknown Verrucomicrobia [meta_mOTU_v2_6061]", "unknown Acetobacter [meta_mOTU_v2_6063]", "unknown Alistipes [meta_mOTU_v2_6070]", "unknown Parabacteroides [meta_mOTU_v2_6071]", "unknown Clostridiales [meta_mOTU_v2_6073]", "unknown Bacteria [meta_mOTU_v2_6079]", "unknown Clostridiales [meta_mOTU_v2_6080]", "unknown Bacteria [meta_mOTU_v2_6087]", "unknown Clostridiales [meta_mOTU_v2_6088]", "Verrucomicrobia bacterium CAG:312_58_20 [meta_mOTU_v2_6090]", "unknown Firmicutes [meta_mOTU_v2_6091]", "unknown Clostridium [meta_mOTU_v2_6098]", "unknown Clostridiales [meta_mOTU_v2_6105]", "unknown Clostridiales [meta_mOTU_v2_6107]", "unknown Pseudoflavonifractor [meta_mOTU_v2_6108]", "unknown Clostridium [meta_mOTU_v2_6117]", "Clostridium sp. CAG:533 [meta_mOTU_v2_6119]", "unknown Clostridiales [meta_mOTU_v2_6128]", "Clostridium sp. CAG:964 [meta_mOTU_v2_6131]", "unknown Clostridiales [meta_mOTU_v2_6134]", "unknown Clostridiales [meta_mOTU_v2_6144]", "unknown Clostridium [meta_mOTU_v2_6147]", "unknown Ruminococcus [meta_mOTU_v2_6152]", "Alistipes sp. An31A [meta_mOTU_v2_6154]", "unknown Clostridium [meta_mOTU_v2_6156]", "Clostridium sp. CAG:288 [meta_mOTU_v2_6160]", "unknown Bacteroidales [meta_mOTU_v2_6162]", "unknown Ruminococcaceae [meta_mOTU_v2_6174]", "unknown Roseburia [meta_mOTU_v2_6176]", "Clostridium sp. CAG:510 [meta_mOTU_v2_6178]", "unknown Clostridiales [meta_mOTU_v2_6190]", "unknown Clostridiales Family XIII. Incertae Sedis [meta_mOTU_v2_6192]", "unknown Clostridiales [meta_mOTU_v2_6193]", "unknown Bacteroidales [meta_mOTU_v2_6194]", "unknown Clostridiales [meta_mOTU_v2_6197]", "uncultured Eubacterium sp. [meta_mOTU_v2_6201]", "unknown Bacteroidales [meta_mOTU_v2_6217]", "Clostridium sp. CAG:343 [meta_mOTU_v2_6218]", "Clostridium sp. CAG:533 [meta_mOTU_v2_6224]", "unknown Firmicutes [meta_mOTU_v2_6228]", "unknown Clostridiales [meta_mOTU_v2_6233]", "unknown Firmicutes [meta_mOTU_v2_6237]", "unknown Clostridiales [meta_mOTU_v2_6238]", "unknown Clostridiales [meta_mOTU_v2_6249]", "unknown Alistipes [meta_mOTU_v2_6252]", "unknown Coprococcus [meta_mOTU_v2_6257]", "unknown Clostridiales [meta_mOTU_v2_6259]", "unknown Clostridiales [meta_mOTU_v2_6260]", "unknown Clostridiales [meta_mOTU_v2_6261]", "unknown Dehalococcoidales [meta_mOTU_v2_6270]", "unknown Clostridiales [meta_mOTU_v2_6272]", "unknown Clostridiales [meta_mOTU_v2_6275]", "unknown Akkermansia [meta_mOTU_v2_6276]", "unknown Firmicutes [meta_mOTU_v2_6277]", "unknown Clostridiales [meta_mOTU_v2_6281]", "unknown Clostridium [meta_mOTU_v2_6285]", "unknown Lactobacillales [meta_mOTU_v2_6288]", "unknown Prevotella [meta_mOTU_v2_6289]", "unknown Clostridium [meta_mOTU_v2_6292]", "unknown Prevotella [meta_mOTU_v2_6294]", "Eggerthella sp. CAG:368 [meta_mOTU_v2_6312]", "Brachyspira sp. CAG:484 [meta_mOTU_v2_6314]", "unknown Clostridiales [meta_mOTU_v2_6316]", "unknown Firmicutes [meta_mOTU_v2_6331]", "Roseburia sp. CAG:182 [meta_mOTU_v2_6334]", "unknown Dehalococcoidales [meta_mOTU_v2_6336]", "unknown Clostridium [meta_mOTU_v2_6338]", "Merdibacter massiliensis [meta_mOTU_v2_6340]", "unknown Clostridiales [meta_mOTU_v2_6348]", "unknown Clostridium [meta_mOTU_v2_6349]", "unknown Clostridium [meta_mOTU_v2_6363]", "unknown Clostridiales [meta_mOTU_v2_6371]", "unknown Bacteroidales [meta_mOTU_v2_6375]", "uncultured Clostridium sp. [meta_mOTU_v2_6381]", "unknown Prevotella [meta_mOTU_v2_6387]", "Coprobacillus sp. CAG:826 [meta_mOTU_v2_6390]", "Sutterella sp. CAG:521 [meta_mOTU_v2_6395]", "unknown Prevotella [meta_mOTU_v2_6399]", "Dialister invisus [meta_mOTU_v2_6402]", "Mycoplasma sp. CAG:472 [meta_mOTU_v2_6403]", "unknown Clostridiales [meta_mOTU_v2_6407]", "Firmicutes bacterium ADurb.Bin467 [meta_mOTU_v2_6414]", "unknown Prevotella [meta_mOTU_v2_6415]", "unknown Clostridiales [meta_mOTU_v2_6416]", "unknown Clostridiales [meta_mOTU_v2_6419]", "unknown Prevotella [meta_mOTU_v2_6430]", "unknown Eggerthellaceae [meta_mOTU_v2_6437]", "unknown Oscillibacter [meta_mOTU_v2_6438]", "unknown Faecalibacterium [meta_mOTU_v2_6452]", "unknown Prevotella [meta_mOTU_v2_6456]", "unknown Atopobiaceae [meta_mOTU_v2_6458]", "unknown Clostridiales [meta_mOTU_v2_6465]", "Clostridium sp. CAG:609 [meta_mOTU_v2_6466]", "Holdemanella biformis [meta_mOTU_v2_6468]", "unknown Clostridiales [meta_mOTU_v2_6475]", "Clostridium sp. CAG:1219 [meta_mOTU_v2_6476]", "unknown Ruminococcaceae [meta_mOTU_v2_6478]", "unknown Clostridiales [meta_mOTU_v2_6484]", "unknown Porphyromonas [meta_mOTU_v2_6490]", "unknown Clostridiales [meta_mOTU_v2_6495]", "unknown Bacteroidales [meta_mOTU_v2_6502]", "unknown Clostridiales [meta_mOTU_v2_6503]", "unknown Eubacterium [meta_mOTU_v2_6509]", "unknown Clostridiales [meta_mOTU_v2_6511]", "unknown Prevotella [meta_mOTU_v2_6516]", "Lentisphaerae bacterium ADurb.Bin242 [meta_mOTU_v2_6522]", "unknown Clostridiales [meta_mOTU_v2_6523]", "unknown Clostridiales [meta_mOTU_v2_6525]", "unknown Azospirillum [meta_mOTU_v2_6527]", "unknown Bacteroidales [meta_mOTU_v2_6528]", "Ruminococcus sp. CAG:382 [meta_mOTU_v2_6530]", "Coprobacillus sp. CAG:826 [meta_mOTU_v2_6536]", "unknown Clostridiales [meta_mOTU_v2_6548]", "unknown Ruminococcaceae [meta_mOTU_v2_6557]", "Clostridium sp. CAG:628 [meta_mOTU_v2_6559]", "unknown Clostridiales [meta_mOTU_v2_6561]", "unknown Clostridiales [meta_mOTU_v2_6571]", "unknown Clostridiales [meta_mOTU_v2_6575]", "unknown Clostridiales [meta_mOTU_v2_6585]", "unknown Bacteroidales [meta_mOTU_v2_6591]", "unknown Firmicutes [meta_mOTU_v2_6595]", "unknown Firmicutes [meta_mOTU_v2_6596]", "unknown Clostridiales [meta_mOTU_v2_6602]", "unknown Lachnospiraceae [meta_mOTU_v2_6615]", "unknown Atopobiaceae [meta_mOTU_v2_6622]", "unknown Lachnospiraceae [meta_mOTU_v2_6625]", "unknown Clostridiales [meta_mOTU_v2_6629]", "unknown Faecalibacterium [meta_mOTU_v2_6631]", "unknown Clostridiales [meta_mOTU_v2_6632]", "unknown Clostridiales [meta_mOTU_v2_6647]", "unknown Azospirillum [meta_mOTU_v2_6649]", "unknown Ruminococcaceae [meta_mOTU_v2_6652]", "unknown Eubacterium [meta_mOTU_v2_6657]", "unknown Prevotella [meta_mOTU_v2_6663]", "Ruminococcus sp. CAG:177 [meta_mOTU_v2_6664]", "unknown Bacteroidales [meta_mOTU_v2_6670]", "unknown Clostridiales [meta_mOTU_v2_6672]", "Oscillibacter sp. 57_20 [meta_mOTU_v2_6676]", "Mycoplasma sp. CAG:877 [meta_mOTU_v2_6682]", "unknown Clostridiales [meta_mOTU_v2_6686]", "unknown Methanomicrobia [meta_mOTU_v2_6693]", "unknown Prevotella [meta_mOTU_v2_6697]", "unknown Clostridiales [meta_mOTU_v2_6699]", "unknown Clostridiales [meta_mOTU_v2_6700]", "unknown Clostridiales [meta_mOTU_v2_6704]", "Bacillus sp. CAG:988 [meta_mOTU_v2_6706]", "unknown Firmicutes [meta_mOTU_v2_6711]", "unknown Clostridiales [meta_mOTU_v2_6716]", "unknown Clostridiales [meta_mOTU_v2_6721]", "Roseburia sp. CAG:303 [meta_mOTU_v2_6722]", "unknown Ruminococcus [meta_mOTU_v2_6724]", "unknown Ruminococcus [meta_mOTU_v2_6727]", "unknown Firmicutes [meta_mOTU_v2_6730]", "Clostridium sp. CAG:762 [meta_mOTU_v2_6739]", "unknown Clostridium [meta_mOTU_v2_6741]", "Clostridium sp. CAG:798 [meta_mOTU_v2_6742]", "unknown Clostridiales [meta_mOTU_v2_6751]", "unknown Firmicutes [meta_mOTU_v2_6758]", "unknown Clostridiales [meta_mOTU_v2_6760]", "unknown Veillonellaceae [meta_mOTU_v2_6765]", "Subdoligranulum sp. CAG:314 [meta_mOTU_v2_6768]", "unknown Flavobacteriia [meta_mOTU_v2_6771]", "unknown Collinsella [meta_mOTU_v2_6772]", "Clostridium sp. CAG:914 [meta_mOTU_v2_6776]", "unknown Clostridiales [meta_mOTU_v2_6777]", "Clostridium sp. CAG:1024 [meta_mOTU_v2_6786]", "unknown Clostridiales [meta_mOTU_v2_6787]", "Clostridium sp. CAG:710 [meta_mOTU_v2_6788]", "unknown Ruminococcaceae [meta_mOTU_v2_6789]", "unknown Clostridiales [meta_mOTU_v2_6791]", "unknown Clostridium [meta_mOTU_v2_6792]", "Roseburia sp. CAG:309 [meta_mOTU_v2_6793]", "unknown Clostridiales [meta_mOTU_v2_6795]", "unknown Clostridiales [meta_mOTU_v2_6801]", "unknown Clostridiaceae [meta_mOTU_v2_6802]", "unknown Clostridiales [meta_mOTU_v2_6807]", "unknown Clostridiales [meta_mOTU_v2_6808]", "unknown Eggerthellaceae [meta_mOTU_v2_6813]", "unknown Clostridiales [meta_mOTU_v2_6814]", "Dialister sp. CAG:357 [meta_mOTU_v2_6815]", "unknown Clostridium [meta_mOTU_v2_6816]", "Burkholderiales bacterium YL45 [meta_mOTU_v2_6818]", "unknown Clostridiales [meta_mOTU_v2_6819]", "unknown Dehalococcoidales [meta_mOTU_v2_6821]", "unknown Clostridiales [meta_mOTU_v2_6823]", "unknown Clostridiales [meta_mOTU_v2_6832]", "Prevotella sp. CAG:617 [meta_mOTU_v2_6833]", "unknown Clostridiales [meta_mOTU_v2_6834]", "unknown Anaerotruncus [meta_mOTU_v2_6835]", "unknown Firmicutes [meta_mOTU_v2_6848]", "unknown Ruminococcaceae [meta_mOTU_v2_6850]", "unknown Clostridiales [meta_mOTU_v2_6852]", "unknown Clostridiales [meta_mOTU_v2_6856]", "unknown Pasteurellaceae [meta_mOTU_v2_6865]", "unknown Clostridiales [meta_mOTU_v2_6867]", "Roseburia sp. 40_7 [meta_mOTU_v2_6875]", "unknown Clostridium [meta_mOTU_v2_6877]", "unknown Clostridium [meta_mOTU_v2_6883]", "unknown Clostridiales [meta_mOTU_v2_6885]", "unknown Clostridiales [meta_mOTU_v2_6891]", "Clostridium sp. CAG:628 [meta_mOTU_v2_6892]", "unknown Bacteroidales [meta_mOTU_v2_6903]", "unknown Ruminococcaceae [meta_mOTU_v2_6905]", "unknown Firmicutes [meta_mOTU_v2_6906]", "unknown Firmicutes [meta_mOTU_v2_6909]", "unknown Prevotella [meta_mOTU_v2_6911]", "unknown Veillonellaceae [meta_mOTU_v2_6915]", "unknown Clostridiales [meta_mOTU_v2_6916]", "unknown Peptostreptococcaceae [meta_mOTU_v2_6922]", "unknown Clostridiales [meta_mOTU_v2_6926]", "unknown Clostridiales [meta_mOTU_v2_6929]", "unknown Firmicutes [meta_mOTU_v2_6936]", "unknown Lachnospiraceae [meta_mOTU_v2_6937]", "Prevotella sp. CAG:279 [meta_mOTU_v2_6938]", "Staphylococcus sp. CAG:324 [meta_mOTU_v2_6946]", "unknown Bacteroidales [meta_mOTU_v2_6949]", "unknown Clostridiales [meta_mOTU_v2_6961]", "unknown Clostridiales [meta_mOTU_v2_6975]", "unknown Lentisphaerae [meta_mOTU_v2_6979]", "unknown Clostridiales [meta_mOTU_v2_6986]", "unknown Synergistaceae [meta_mOTU_v2_6989]", "unknown Eggerthella [meta_mOTU_v2_6998]", "unknown Acinetobacter [meta_mOTU_v2_7007]", "unknown Massiliomicrobiota [meta_mOTU_v2_7010]", "unknown Ruminococcaceae [meta_mOTU_v2_7012]", "unknown Clostridiales [meta_mOTU_v2_7014]", "unknown Prevotella [meta_mOTU_v2_7015]", "unknown Prevotella [meta_mOTU_v2_7016]", "unknown Clostridiales [meta_mOTU_v2_7018]", "Clostridium sp. CAG:798 [meta_mOTU_v2_7020]", "unknown Clostridium [meta_mOTU_v2_7026]", "unknown Clostridiales [meta_mOTU_v2_7031]", "Prevotella sp. CAG:485 [meta_mOTU_v2_7045]", "unknown Ruminococcus [meta_mOTU_v2_7048]", "Prevotella sp. CAG:873 [meta_mOTU_v2_7050]", "unknown Sutterellaceae [meta_mOTU_v2_7053]", "Coraliomargarita sp. CAG:312 [meta_mOTU_v2_7055]", "Clostridium sp. CAG:167 [meta_mOTU_v2_7056]", "unknown Clostridiales [meta_mOTU_v2_7058]", "unknown Akkermansia [meta_mOTU_v2_7059]", "unknown Clostridiales [meta_mOTU_v2_7061]", "unknown Clostridiales [meta_mOTU_v2_7063]", "unknown Clostridiales [meta_mOTU_v2_7066]", "unknown Clostridiales [meta_mOTU_v2_7067]", "unknown Clostridiales [meta_mOTU_v2_7072]", "Clostridium sp. CAG:411 [meta_mOTU_v2_7074]", "unknown Clostridiales [meta_mOTU_v2_7076]", "unknown Eggerthella [meta_mOTU_v2_7082]", "unknown Clostridiales [meta_mOTU_v2_7083]", "unknown Clostridiales [meta_mOTU_v2_7087]", "Eubacterium sp. CAG:581 [meta_mOTU_v2_7088]", "unknown Bacteroidales [meta_mOTU_v2_7089]", "unknown Clostridiales [meta_mOTU_v2_7093]", "unknown Clostridiales [meta_mOTU_v2_7097]", "Prevotella sp. CAG:1031 [meta_mOTU_v2_7101]", "unknown Clostridiales [meta_mOTU_v2_7104]", "unknown Oscillibacter [meta_mOTU_v2_7111]", "unknown Eubacterium [meta_mOTU_v2_7116]", "Clostridium sp. CAG:452 [meta_mOTU_v2_7118]", "unknown Clostridium [meta_mOTU_v2_7123]", "unknown Clostridiales [meta_mOTU_v2_7124]", "unknown Clostridiales [meta_mOTU_v2_7130]", "unknown Clostridiales [meta_mOTU_v2_7138]", "Eubacterium sp. CAG:274 [meta_mOTU_v2_7140]", "unknown Faecalibacterium [meta_mOTU_v2_7143]", "unknown Clostridiales [meta_mOTU_v2_7145]", "unknown Clostridiales [meta_mOTU_v2_7148]", "unknown Clostridiales [meta_mOTU_v2_7149]", "Clostridium sp. CAG:413 [meta_mOTU_v2_7152]", "unknown Clostridiales [meta_mOTU_v2_7153]", "Faecalibacterium prausnitzii [meta_mOTU_v2_7154]", "unknown Clostridiales [meta_mOTU_v2_7156]", "unknown Clostridiales [meta_mOTU_v2_7157]", "unknown Clostridiales [meta_mOTU_v2_7158]", "unknown Ruminococcus [meta_mOTU_v2_7159]", "unknown Clostridiales [meta_mOTU_v2_7173]", "unknown Firmicutes [meta_mOTU_v2_7175]", "unknown Clostridiales [meta_mOTU_v2_7180]", "Clostridium sp. CAG:302 [meta_mOTU_v2_7183]", "unknown Clostridiales [meta_mOTU_v2_7186]", "Clostridium sp. CAG:226 [meta_mOTU_v2_7187]", "unknown Clostridiales [meta_mOTU_v2_7188]", "unknown Clostridiales [meta_mOTU_v2_7192]", "unknown Prevotella [meta_mOTU_v2_7196]", "unknown Clostridiales [meta_mOTU_v2_7200]", "unknown Clostridiales [meta_mOTU_v2_7202]", "unknown Prevotella [meta_mOTU_v2_7203]", "unknown Clostridiales [meta_mOTU_v2_7209]", "unknown Bacteroidaceae [meta_mOTU_v2_7210]", "unknown Clostridiales [meta_mOTU_v2_7230]", "unknown Clostridium [meta_mOTU_v2_7253]", "Clostridium sp. CAG:451 [meta_mOTU_v2_7262]", "Clostridium sp. AT4 [meta_mOTU_v2_7263]", "unknown Clostridium [meta_mOTU_v2_7266]", "unknown Alistipes [meta_mOTU_v2_7270]", "unknown Ruminococcaceae [meta_mOTU_v2_7271]", "unknown Ruminococcus [meta_mOTU_v2_7275]", "Succinivibrio dextrinosolvens [meta_mOTU_v2_7277]", "Staphylococcus sp. CAG:324 [meta_mOTU_v2_7279]", "unknown Clostridiales [meta_mOTU_v2_7281]", "Dialister invisus [meta_mOTU_v2_7291]", "unknown Clostridiales [meta_mOTU_v2_7298]", "Sutterella sp. CAG:351 [meta_mOTU_v2_7305]", "unknown Clostridiales [meta_mOTU_v2_7306]", "unknown Alistipes [meta_mOTU_v2_7311]", "unknown Bacteroidales [meta_mOTU_v2_7313]", "unknown Clostridiales [meta_mOTU_v2_7317]", "unknown Prevotellaceae [meta_mOTU_v2_7319]", "unknown Clostridiales [meta_mOTU_v2_7320]", "unknown Clostridiales [meta_mOTU_v2_7323]", "Bacteroides sp. CAG:144 [meta_mOTU_v2_7324]", "Eubacterium sp. CAG:156 [meta_mOTU_v2_7325]", "Holdemanella biformis [meta_mOTU_v2_7329]", "unknown Peptostreptococcaceae [meta_mOTU_v2_7331]", "unknown Clostridiales [meta_mOTU_v2_7337]", "unknown Prevotella [meta_mOTU_v2_7342]", "unknown Bacteroidales [meta_mOTU_v2_7353]", "unknown Clostridiales [meta_mOTU_v2_7355]", "unknown Clostridiales [meta_mOTU_v2_7356]", "unknown Clostridiales [meta_mOTU_v2_7359]", "unknown Firmicutes [meta_mOTU_v2_7361]", "unknown Fusobacterium [meta_mOTU_v2_7372]", "unknown Dehalococcoidales [meta_mOTU_v2_7373]", "unknown Ruminococcaceae [meta_mOTU_v2_7375]", "Clostridium sp. CAG:448 [meta_mOTU_v2_7377]", "unknown Clostridium [meta_mOTU_v2_7389]", "unknown Bacteroidales [meta_mOTU_v2_7394]", "unknown Lachnospiraceae [meta_mOTU_v2_7398]", "unknown Ruminococcaceae [meta_mOTU_v2_7401]", "unknown Firmicutes [meta_mOTU_v2_7403]", "Bacteroides sp. 43_108 [meta_mOTU_v2_7407]", "unknown Clostridiales [meta_mOTU_v2_7415]", "unknown Firmicutes [meta_mOTU_v2_7419]", "unknown Tyzzerella [meta_mOTU_v2_7425]", "unknown Dehalococcoidales [meta_mOTU_v2_7432]", "unknown Burkholderiales [meta_mOTU_v2_7434]", "unknown Clostridiales [meta_mOTU_v2_7440]", "Eubacterium sp. CAG:202 [meta_mOTU_v2_7449]", "Clostridium sp. CAG:217 [meta_mOTU_v2_7451]", "unknown Firmicutes [meta_mOTU_v2_7454]", "unknown Clostridiales [meta_mOTU_v2_7455]", "unknown Clostridiales [meta_mOTU_v2_7462]", "unknown Clostridiales [meta_mOTU_v2_7467]", "unknown Clostridium [meta_mOTU_v2_7468]", "Anaerotruncus sp. CAG:528 [meta_mOTU_v2_7471]", "unknown Ruminococcus [meta_mOTU_v2_7476]", "unknown Clostridium [meta_mOTU_v2_7480]", "unknown Eggerthella [meta_mOTU_v2_7512]", "unknown Sutterella [meta_mOTU_v2_7526]", "unknown Clostridiales [meta_mOTU_v2_7527]", "unknown Clostridium [meta_mOTU_v2_7530]", "unknown Clostridiales [meta_mOTU_v2_7531]", "unknown Bacteroidaceae [meta_mOTU_v2_7534]", "unknown Clostridiales [meta_mOTU_v2_7541]", "unknown Clostridiales [meta_mOTU_v2_7546]", "unknown Clostridiales [meta_mOTU_v2_7550]", "unknown Clostridiales [meta_mOTU_v2_7553]", "unknown Clostridiales [meta_mOTU_v2_7561]", "unknown Roseburia [meta_mOTU_v2_7567]", "Clostridium sp. CAG:492 [meta_mOTU_v2_7568]", "unknown Collinsella [meta_mOTU_v2_7573]", "unknown Bacteroidaceae [meta_mOTU_v2_7579]", "unknown Bacteroidaceae [meta_mOTU_v2_7587]", "Holdemanella biformis [meta_mOTU_v2_7589]", "unknown Clostridiales [meta_mOTU_v2_7590]", "unknown Bacteroidaceae [meta_mOTU_v2_7591]", "unknown Ruminococcaceae [meta_mOTU_v2_7593]", "Mycoplasma sp. CAG:956 [meta_mOTU_v2_7596]", "unknown Clostridiales [meta_mOTU_v2_7600]", "unknown Azospirillum [meta_mOTU_v2_7608]", "Niameybacter massiliensis [meta_mOTU_v2_7610]", "Clostridium sp. CAG:1193 [meta_mOTU_v2_7613]", "Sutterella sp. CAG:351 [meta_mOTU_v2_7614]", "unknown Clostridiales [meta_mOTU_v2_7620]", "Coprobacillus sp. CAG:605 [meta_mOTU_v2_7625]", "Clostridium sp. CAG:433 [meta_mOTU_v2_7638]", "unknown Clostridiales [meta_mOTU_v2_7643]", "unknown Clostridium [meta_mOTU_v2_7645]", "unknown Pasteurellaceae [meta_mOTU_v2_7650]", "unknown Ruminococcaceae [meta_mOTU_v2_7652]", "unknown Porphyromonas [meta_mOTU_v2_7656]", "Sutterella sp. CAG:521 [meta_mOTU_v2_7660]", "Holdemanella biformis [meta_mOTU_v2_7667]", "Eubacterium sp. CAG:38 [meta_mOTU_v2_7668]", "unknown Azospirillum [meta_mOTU_v2_7674]", "unknown Clostridiales [meta_mOTU_v2_7682]", "unknown Clostridiales [meta_mOTU_v2_7684]", "unknown Clostridiales [meta_mOTU_v2_7685]", "unknown Eubacterium [meta_mOTU_v2_7687]", "unknown Firmicutes [meta_mOTU_v2_7689]", "unknown Eggerthella [meta_mOTU_v2_7693]", "unknown Clostridiales [meta_mOTU_v2_7697]", "unknown Clostridiales [meta_mOTU_v2_7702]", "unknown Clostridiales [meta_mOTU_v2_7707]", "unknown Clostridiales [meta_mOTU_v2_7717]", "unknown Faecalibacterium [meta_mOTU_v2_7718]", "unknown Clostridium [meta_mOTU_v2_7721]", "unknown Sutterella [meta_mOTU_v2_7723]", "unknown Olsenella [meta_mOTU_v2_7727]", "unknown Clostridiales [meta_mOTU_v2_7731]", "unknown Clostridiales [meta_mOTU_v2_7735]", "unknown Azospirillum [meta_mOTU_v2_7737]", "unknown Firmicutes [meta_mOTU_v2_7746]", "unknown Bacteroidales [meta_mOTU_v2_7748]", "unknown Clostridium [meta_mOTU_v2_7749]", "unknown Firmicutes [meta_mOTU_v2_7751]", "unknown Clostridiales [meta_mOTU_v2_7752]", "Ruminococcus sp. CAG:724 [meta_mOTU_v2_7753]", "unknown Firmicutes [meta_mOTU_v2_7755]", "unknown Firmicutes [meta_mOTU_v2_7760]", "Clostridium sp. CAG:138 [meta_mOTU_v2_7765]", "unknown Clostridiales [meta_mOTU_v2_7769]", "Staphylococcus sp. CAG:324 [meta_mOTU_v2_7772]", "Ruminococcus sp. CAG:403 [meta_mOTU_v2_7774]", "unknown Porphyromonas [meta_mOTU_v2_7777]", "unknown Clostridiales [meta_mOTU_v2_7778]", "unknown Clostridiales [meta_mOTU_v2_7781]", "unknown Clostridiales [meta_mOTU_v2_7782]", "unknown Clostridiales [meta_mOTU_v2_7784]", "Clostridium sp. CAG:230 [meta_mOTU_v2_7788]", "Clostridium sp. CAG:1193 [meta_mOTU_v2_7789]", "unknown Erysipelotrichaceae [meta_mOTU_v2_7790]", "unknown Clostridiales [meta_mOTU_v2_7795]", "unknown Clostridiales [meta_mOTU_v2_7800]" ], "rows": 566, "table": true, "tojson": true }, { "name": "wirbel_otu_small", "title": "subset of mOTU table from Wirbel et al. meta-analysis of fecal metagenomes.", "object": "wirbel_otu_small", "class": [ "data.frame" ], "fields": [ "Fusobacterium nucleatum s. vincentii [ref_mOTU_v2_0754]", "Fusobacterium nucleatum s. animalis [ref_mOTU_v2_0776]", "Fusobacterium nucleatum s. nucleatum [ref_mOTU_v2_0777]", "Faecalibacterium prausnitzii [ref_mOTU_v2_1379]", "Eubacterium siraeum [ref_mOTU_v2_1387]", "Eubacterium sp. [ref_mOTU_v2_1395]", "Fusobacterium ulcerans [ref_mOTU_v2_1396]", "Fusobacterium sp. oral taxon 370 [ref_mOTU_v2_1403]", "Fusobacterium gonidiaformans [ref_mOTU_v2_1404]", "Eubacterium rectale [ref_mOTU_v2_1416]", "Porphyromonas asaccharolytica [ref_mOTU_v2_1517]", "Porphyromonas somerae [ref_mOTU_v2_2101]", "Porphyromonas uenonis [ref_mOTU_v2_2102]", "Eubacterium ramulus [ref_mOTU_v2_2795]", "Eubacterium ventriosum [ref_mOTU_v2_4204]", "Eubacterium hallii [ref_mOTU_v2_4207]", "Faecalibacterium prausnitzii [ref_mOTU_v2_4211]", "Fusobacterium mortiferum [ref_mOTU_v2_4310]", "Fusobacterium varium [ref_mOTU_v2_4311]", "Eubacterium eligens [ref_mOTU_v2_4389]", "Porphyromonas uenonis [ref_mOTU_v2_4616]", "Faecalibacterium prausnitzii [ref_mOTU_v2_4875]", "Faecalibacterium prausnitzii [ref_mOTU_v2_4910]", "unknown Porphyromonas [meta_mOTU_v2_5431]", "unknown Eubacterium [meta_mOTU_v2_5463]", "uncultured Eubacterium sp. [meta_mOTU_v2_5477]", "unknown Faecalibacterium [meta_mOTU_v2_5779]", "unknown Faecalibacterium [meta_mOTU_v2_5815]", "uncultured Eubacterium sp. [meta_mOTU_v2_6201]", "unknown Faecalibacterium [meta_mOTU_v2_6452]", "unknown Porphyromonas [meta_mOTU_v2_6490]", "unknown Eubacterium [meta_mOTU_v2_6509]", "unknown Faecalibacterium [meta_mOTU_v2_6631]", "unknown Eubacterium [meta_mOTU_v2_6657]", "Eubacterium sp. CAG:581 [meta_mOTU_v2_7088]", "unknown Eubacterium [meta_mOTU_v2_7116]", "Eubacterium sp. CAG:274 [meta_mOTU_v2_7140]", "unknown Faecalibacterium [meta_mOTU_v2_7143]", "Faecalibacterium prausnitzii [meta_mOTU_v2_7154]", "Eubacterium sp. CAG:156 [meta_mOTU_v2_7325]", "unknown Fusobacterium [meta_mOTU_v2_7372]", "Eubacterium sp. CAG:202 [meta_mOTU_v2_7449]", "unknown Porphyromonas [meta_mOTU_v2_7656]", "Eubacterium sp. CAG:38 [meta_mOTU_v2_7668]", "unknown Eubacterium [meta_mOTU_v2_7687]", "unknown Faecalibacterium [meta_mOTU_v2_7718]", "unknown Porphyromonas [meta_mOTU_v2_7777]" ], "rows": 320, "table": true, "tojson": true }, { "name": "wirbel_sample", "title": "Covariates from Wirbel et al. meta-analysis of fecal metagenomes.", "object": "wirbel_sample", "class": [ "data.frame" ], "fields": [ "Sample_ID", "External_ID", "Age", "Gender", "BMI", "Country", "Study", "Group", "Library_Size", "Age_spline.1", "Age_spline.2", "BMI_spline.1", "BMI_spline.2", "Sampling" ], "rows": 566, "table": true, "tojson": true }, { "name": "wirbel_sample_small", "title": "Covariates from Wirbel et al. meta-analysis of fecal metagenomes, for a subset of samples.", "object": "wirbel_sample_small", "class": [ "data.frame" ], "fields": [ "Sample_ID", "External_ID", "Age", "Gender", "BMI", "Country", "Study", "Group", "Library_Size", "Age_spline.1", "Age_spline.2", "BMI_spline.1", "BMI_spline.2", "Sampling" ], "rows": 320, "table": true, "tojson": true }, { "name": "wirbel_taxonomy", "title": "Taxonomy information for mOTUs from Wirbel et al. meta analysis.", "object": "wirbel_taxonomy", "class": [ "matrix", "array" ], "fields": [ "domain", "phylum", "class", "order", "family", "genus", "species" ], "rows": 845, "table": true, "tojson": true } ], "_help": [ { "page": "control_fn", "title": "Create list of control options (to pass to 'emuFit()')", "topics": [ "control_fn" ] }, { "page": "dpseudohuber_median_dx", "title": "Calculate the derivative to the pseudo-Huber smoothed median", "topics": [ "dpseudohuber_median_dx", "dpsuedohuber_median_dx" ] }, { "page": "emuFit", "title": "Fit radEmu model", "topics": [ "emuFit" ] }, { "page": "emuFit_check", "title": "Runs checks for appropriate arguments before running 'emuFit()'", "topics": [ "emuFit_check" ] }, { "page": "emuFit_micro", "title": "Fit radEmu model. 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